PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG419900.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 386aa    MW: 42914.5 Da    PI: 6.2471
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG419900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH120.0004751041445
                          HHHHHHHHHHHCTSCCC...TTS-.STCHHHHH CS
                  HLH  14 driNsafeeLrellPkaskapskK.lsKaeiLe 45 
                          ++i ++++eLr +l ++   +++K  s +++L+
  Pavir.3KG419900.2.p  75 ENISERIQELRAMLASS---KKRKeRSSSQTLR 104
                          79**************9...88888*******8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF540012.55E-10172370No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MERAESCSST TNPATQVGKG CIDTNVLAET TTAEALPGTS NVKEDQGSQH PDTMEIEKGL  60
AYCSEGVTTI QNWCENISER IQELRAMLAS SKKRKERSSS QTLRTPPFAL DLSGTSPEED  120
IMKGKTTHAS AGGGSSSGRE ATSQSVWVDV KGRLPVRLTG NQIKMGILKP VELDSNIIAA  180
TVRLLSEFER NMILHRSNGA SRHYIPPEWT SYVTAGNFEA HISEQYFKNS PTGYDLTTCN  240
MLLAPVRFGQ GWSCYAINVP ESTLTVMDPF LKADAGNIRI QWHQITARKV LEEAIRCFDI  300
VRSVDTAETT KWKVNIQLLT EVKCCTWDTG IYTMTCMRWY EPEVDVSIIR LDERTAYEAR  360
KQLAHDLINM ECNHAQLPHR LPTST*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-